Assessment of a Simplified Cell-Free DNA Method for Prenatal Down Syndrome Screening

Authors: Palomaki G, Eklund E, Kloza E et al. (2022 - Clinical Chemistry)

Assessment and clinical utility of a non-next-generation sequencing-based non-invasive prenatal testing technology

Authors: Gormus U, Chaubey A, Shenoy S et al. (2021 - MDPI)

Imaging single DNA molecules for high precision NIPT

Authors: Dahl F, Ericsson O, Karlberg O, Karlsson F, Howell M, Persson F, Roos F, Stenberg J, Ahola T, Alftren I, Andersson B, Barkenas E, Brandner B, Dahlberg J, Elfman S, Eriksson M, Forsgren P, Francois N, Gousseva A, Hakamali F, Janfalk-Carlsson A, Johansson H, Lundgren J, Mohsenchian A, Olausson L, Olofsson S, Qureshi A, Skarpas B, Savneby A, Astrom E, Ohman O, Westgren M, Kopp-Kallner H, Fianu-Johansson A, Syngelaki A, Nicolaides K (2018 - Scientific Reports)

Desarrollo del primer ensayo prenatal no invasivo (NIPT) en Argentina

Authors: Vazquez M, Brun B, Grisolia M et al. (2017 - Conicet Digital)

Variability in Fetal Fraction Estimation: Comparing Fetal Fractions Reported by Noninvasive Prenatal Testing Providers Globally

Authors: Becking E, Linsthorst J, Patton S, Gutowska-Ding W, Goodall R, Khawaja F, Morgan F, Deans Z, Chitty L, Bekker M, Scheffer P, Sistermans E (2023 - Clinical Chemistry)

Synthesis of positive plasmas with known chromosomal abnormalities for validation of non-invasive prenatal screening

Authors: Qi Z, Yu J (2023 - Frontiers in Genetics)

NIPT & Oncology 2-1

Detection of Hybrid Fusion Transcripts, Aberrant Transcript Expression and Specific Single Nucleotide Variants in Acute Leukemia and Myeloid Disorders with Recurrent Gene Rearrangements.

Authors: Li Y, Deng K, Kaner J, Geyer J, Ouseph M, Fang F, Xu K, Roboz G, Kluk M (2023 - Karger)

Rapid and Automated Semiconductor-Based Next-Generation Sequencing for Simultaneous Detection of Somatic DNA and RNA Aberrations in Myeloid Neoplasms

Authors: Sande C, Wu R, Yang G, Sussman R, Bigdeli A, Rushton C, Chitturi A, Patel J, Szankasi P, Morrissette J, Lim M, Elenitoba-Johnson K (2023 - Journal of Molecular Diagnostics)

Validation of a Cell-Free DNA NGS Assay for Hematological Malignancies

Authors: Gedvilaite E, DiNapoli S, Spence C, Diosdado M, Razamova A, Bowman A, Tsui D, Salles G, Batlevi C, von Keudell G, Ptashkin R, Zehir A, Benayed R, Berger M, Brannon A, Arcila M (2022 - Blood)

Analysis of genetic variants in myeloproliferative neoplasms using a 22-gene next-generation sequencing panel

Authors: Tan J, Chow Y, Zainul Abidin N, Chang K, Selvaratnam V, Tumian N, Poh Y, Veerakumarasivam A, Laffan M, Wong C (2022 - BMC Medical Genomics)

Validation, Implementation, and Clinical Impact of the Oncomine Myeloid Targeted-Amplicon DNA and RNA Ion Semiconductor Sequencing Assay

Authors: Ferrone C, Wong H, Semenuk L, Werunga B, Snetsinger B, Zhang X, Zhang G, Lui J, Richard-Carpentier G, Crocker S, Good D, Hay A, Quest G, Carson N, Feilotter H, Rauh M (2021 - The Journal of Molecular Diagnostics)

A Novel NGS-Based Simultaneous Detection of DNA and RNA Biomarkers Using Total Nucleic Acid (TNA) for Acute Lymphocytic Leukemia (ALL)

Authors: Ramesh A, Koo S, Kang S, Ghosal A, Alarcon F, Gyuris T, Jung S, Magnan C, Nam H, Thomas B, Fabunan R, Petersen P, Lopez-Diaz F, Bender R, Agersborg S, Ye F, Funari V (2021 - Blood)

Clinical performance and utility of a comprehensive next-generation sequencing DNA panel for the simultaneous analysis of variants, TMB and MSI for myeloid neoplasms

Authors: Sahajpal N, Mondal A, Ananth S, Njau A, Ahluwalia P, Jones K, Ahluwalia M, Okechukwu N, Savage N, Kota V, Rojiani A, Kolhe R (2020 - Plos One)

Feasibility of Combined Detection of Gene Mutations and Fusion Transcripts in Bone Marrow Trephines from Leukemic Neoplasms

Authors: Bartel S, Hasemeier B, Vogtmann J, Schipper E, Busche G, Schlue J, Kreipe H, Lehmann U (2020 - The Journal of Molecular Diagnostics)

Mutation analysis in Korean patients with T-cell acute lymphoblastic leukemia

Authors: Park K, Kim I, Yang E, Lim Y, Cho S (2020 - Taylor & Francis Online)

Clinical Validation of a Myeloid Next-Generation Sequencing Panel for Single-Nucleotide Variants, Insertions/Deletions, and Fusion Genes

Authors: Izevbaye I, Liang L, Mather C, El-Hallani S, Maglantay R, Saini L (2020 - The Journal of Molecular Diagnostics)

Development and validation of blood tumor mutational burden reference standards

Authors: Raiber-Moreau E, Portella G, Butler M, Clement O, Konigshofer Y, Hadfield J (2023 - Wiley Online Library)

External quality assessment (EQA) for tumor mutational burden: results of an international IQN path feasibility pilot scheme

Authors: Esposito Abante R, Cheetham M, Fairley J, Pasquale R, Sacco A, Nicola W, Dean Z, Patton S, Normanno N (2022 - Springer Link)

Aligning tumor mutational burden (TMB) quantification across diagnostic platforms: phase II of the Friends of Cancer Research TMB Harmonization Project

Authors: Vega D, Yee L, McShane L, Williams P, Chen L, Vilimas T, Fabrizio D, Funari V, Newberg J, Bruce L, Chen S, Baden J, Carl Barrett J, Beer P, Butler M, Cheng J, Conroy J, Cyanam D, Eyring K, Garcia E, Green G, Gregersen V, Hellmann M, Keefer L, Lasiter L, Lazar A, Li M, MacConaill L, Meier K, Mellert H, Pabla S, Pallavajjalla A, Pestano G, Salgado R, Samara R, Sokol E, Stafford P, Budczies J, Stenzinger A, Tom W, Valkenburg K, Wang X, Weigman V, Xie M, Xie Q, Zehir A, Zhao C, Zhao Y, Stewart M, Allen J (2021 - Annals of Oncology)

Paired analysis of tumor mutation burden calculated by targeted deep sequencing panel and whole exome sequencing in non-small cell lung cancer

Authors: Park S, Lee C, Ku B, Kim M, Park W, Kim N, Ahn M (2021 - BMB Reports)

One in seven pathogenic variants can be challenging to detect by NGS: an analysis of 450,000 patients with implications for clinical sensitivity and genetic test implementation

Authors: Lincoln S, Hambuch T, Zook J, Bristow S, Hatchell K, Truty R, Kennemer M, Shirts B, Fellowes A, Chowdhury S, Klee E, Mahamdallie S, Cleveland M, Vallone P, Ding Y, Seal S, DeSilva W, Tomson F, Huang C, Garlick R, Rahman N, Salit M, Kingsmore S, Ferber M, Aradhya S, Nussbaum R (2021 - Genetics in Medicine)

A clinically validated whole genome pipeline for structural variant detection and analysis

Authors: Neerman N, Faust G, Meeks N, Modai S, Kalfon L, Falik-Zaccai T, Kaplun A (2019 - BMC Genomics)

Multiplexed Reference Materials as Controls for Diagnostic Next-Generation Sequencing A Pilot Investigating Applications for Hypertrophic Cardiomyopathy

Authors: Kudalkar E, Almontashiri N, Huang C, Anekella B, Bowser M, Hynes E, Garlick R, Funke B (2016 - PubMed)

Early-Stage Breast Cancer Detection in Breast Milk

Authors: Saura C, Ortiz C, Matito J, Arenas E, Sunol A, Martin A, Cordoba O, Martínez-Sabadell A, García-Ruiz I, Miranda I, Morales-Comas C, Carrasco E, Viaplana C, Peg V, Nuciforo P, Bayó-Puxan N, Gonzalez-Medina A, Miquel J, Gomez-Rey M, Villacampa G, Arevalo S, Espinosa-Bravo M, Balmana J, Dienstmann R, Arribas J, Tabernero J, Vivancos A, Sanso M (2023 - AACR Journals)

Pre-analytical conditions and implementation of quality control steps in liquid biopsy analysis

Authors: Ntzifa A, Lianidou E (2023 - Taylor & Francis Online)

Single‐tube two‐pronged approach using both cell‐free DNA and RNA for multimodal biomarker tests at the time of biopsy

Authors: Lin S, Lai H, Yeh C (2023 - Wiley Online Library)

Evaluation of the Analytical Performance of Oncomine Lung cfDNA Assay for Detection of Plasma EGFR Mutations

Authors: Cho Y, Park J, Han J, Kim T (2023 - MDPI)

Calibration of cell-free DNA measurements by next-generation sequencing

Authors: Hoerres D, Dai Q, Elmore S, Sheth S, Gupta G, Kumar S, Gulley M (2023 - AJCP)

Sensitive Detection of Cell-Free Tumour DNA Using Optimised Targeted Sequencing Can Predict Prognosis in Gastro-Oesophageal Cancer

Authors: Wallander K, Haider Z, Jeggari A, Foroughi-Asl H, Gellerbring A, Lyander A, Chozhan A, Cuba Gyllensten O, Hagglund M, Wirta V, Nordenskjold M, Lindblad M (2023 - MDPI)

Contrived Materials and a Data Set for the Evaluation of Liquid Biopsy Tests

Authors: Hernandez K, Agius P, Baden J, Cao R, Clement O, Corner A, Craft J, Dean D, Dry K, Grigaityte K, Grossman R, Hicks K, Higa N, Holzer T, Jensen J, Johann D, Katz S, Kolatkar A, Keynton J, Lee J, Maar D, Martini J, Meyer C, Robers P, Ryder M, Salvatore L, Schageman J, Somiari S, Stetson D, Stern M, Xu L, Leiman L (2023 - The Journal of Molecular Diagnostics)

Analytical and clinical validation of a custom 15-gene next-generation sequencing panel for the evaluation of circulating tumor DNA mutations in patients with advanced non-small-cell lung cancer

Authors: Chow Y, Zainul Abidin N, Kow K, Tho L, Wong C (2022 - Plos One)

Circulating Tumor DNA-Based Disease Monitoring of Patients with Locally Advanced Esophageal Cancer

Authors: Hofste L, Geerlings M, von Rhein D, Tolmeijer S, Weiss M, Gilissen C, Hofste T, Garms L, Janssen M, Rutten H, Rosman C, van der Post R, Klarenbeek B, Ligtenberg M (2022 - MDPI)

Analytical and Clinical Validation of Cell-Free Circulating Tumor DNA Assay for the Estimation of Tumor Mutational Burden

Authors: Lee K, Seo J, Lee C, Shin S, Choi Z, Min S, Yang J, Kwon W, Yun W, Park M, Choi J, Chung H, Lee S, Rha S (2022 - Clinical Chemistry)

Rapid genomic profiling of circulating tumor DNA in non-small cell lung cancer using Oncomine Precision Assay with Genexus™ integrated sequencer

Authors: Low S, Ariyasu R, Uchibori K, Hayashi R, Chan H, Manabe R, Ogusu S, Amino Y, Kitazono S, Yanagitani N, Nakamura Y, Nishio M (2022 - PubMed)

Applications of molecular barcode sequencing for the detection of low-frequency variants in circulating tumour DNA from hepatocellular carcinoma

Authors: Lee H, Kim E, Cho K, Park H, Seo J, Lee H, Baek E, Choi J, Han K, Lee S, Park J (2022 - PubMed)

Parallel Analysis of Pre- and Postoperative Circulating Tumor DNA and Matched Tumor Tissues in Resectable Pancreatic Ductal Adenocarcinoma: A Prospective Cohort Study

Authors: Lee J, Han Y, Yun W, Kwon W, Kim H, Kim J, Seong M, Jang J, Park S (2022 - Clinical Chemistry)

UMIErrorCorrect and UMIAnalyzer: Software for Consensus Read Generation, Error Correction, and Visualization Using Unique Molecular Identifiers

Authors: Osterlund T, Filges S, Johansson G, Stahlberg A (2022 - Clinical Chemistry)

Clinical validation and implementation of droplet digital PCR for the detection of BRAF mutations from cell-free DNA

Authors: Arnolda R, Howlett K, Chan T, Raleigh J, Hatzimihalis A, Bell A, Fellowes A, Sandhu S, McArthur G, Fox S, Dawson S, Hewitt C, Jones K, Wong S (2022 - PubMed)

Dutch National Round Robin Trial on Plasma-Derived Circulating Cell-Free DNA Extraction Methods Routinely Used in Clinical Pathology for Molecular Tumor Profiling

Authors: Van Der Leest P, Ketelaar E, Van Noesel C, Van Den Broek D, Van Boerdonk R, Deiman B, Rifaela N, Van Der Geize R, Huijsmans C, Ernst J, Speel J, Geerlings M, Van Schaik R, Jansen M, Dane-Vogelaar R, Driehuis E, Leers M, Sidorenkov G, Tamminga M, Van Kempen L, Schuuring E (2022 - Clinical Chemistry)

Direct comparison of circulating tumor DNA sequencing assays with targeted large gene panels

Authors:  Yu L, Lopez G, Wang Y, Basavanhally T, Browne A, Huang C, Dorsey L, Jen J, Hersey S (2022 - Plos One)

Liquid Profiling for Cancer Patient Stratification in Precision Medicine—Current Status and Challenges for Successful Implementation in Standard Care

Authors: Haselmann V, Hedtke M, Neumaier M (2022 - MDPI)

A novel xenonucleic acid-mediated molecular clamping technology for early colorectal cancer screening

Authors:  Sun Q, Pastor L, Du J, Powell M, Zhang A, Bodmer W, Wu J, Zheng S, Sha M (2021 - Plos One)

Sensitive and robust liquid biopsy-based detection of PIK3CA mutations in hormone-receptor-positive metastatic breast cancer patients

Authors: Suppan C, Graft R, Jahn S, Zhou Q, Klocker E, Bartsch R, Terbuch A, Kashofer K, Regitnig P, Lindenmann J, Posch F, Gerritsmann H, Jost P, Heitzer E, Dandachi N, Balic M (2021 - British Journal of Cancer)

Validation of a Circulating Tumor DNA-Based Next-Generation Sequencing Assay in a Cohort of Patients with Solid tumors: A Proposed Solution for Decentralized Plasma Testing

Authors: Al Zoughbi W, Fox J, Beg S, Papp E, Hissong E, Ohara K, Keefer L, Sigouros M, Kane T, Bockelman D, Nichol D, Patchell E, Bareja R, Karandikar A, Alnajar H, Cerqueira G, Guthrie V, Verner E, Manohar J, Greco N, Wilkes D, Tagawa S, Malbari M, Holcomb K, Eng K, Shah M, Altorki N, Sboner A, Nanus D, Faltas B, Sternberg C, Simmons J, Houvras Y, Molina A, Angiuoli S, Elemento O, Mosquera J (2021 - The Oncologist)

Deepgentm—a novel variant calling assay for low frequency variants

Authors: Hermann B, Pfeil S, Groenke N, Schaible S, Kunze R, Ris F, Hagen M, Bhakdi J (2021 - MDPI)

Circulating tumour DNA sequencing to determine therapeutic response and identify tumour heterogeneity in patients with paediatric solid tumours

Authors: Stankunaite R, George S, Gallagher L, Jamal S, Shaikh R, Yuan L, Hughes D, Proszek P, Carter P, Pietka G, Heide T, James C, Tari H, Lynn C, Jain N, Portela L, Rogers T, Vaidya S, Chisholm J, Carceller F, Szychot E, Mandeville H, Angelini P, Jesudason A, Jackson M, Marshall L, Gatz S, Anderson J, Sottoriva A, Chesler L, Hubank M (2021 - European Journal of Cancer)

Validation of a next-generation sequencing assay for the detection of EGFR mutations in cell-free circulating tumor DNA

Authors: Stitz R, Buder A, Silye R, Baumgartner B, Puhringer F, Filipits M, Oberndorfer E, Heitzer E (2021 - ScienceDirect)

Validation of ctDNA Quality Control Materials Through a Precompetitive Collaboration of the Foundation for the National Institutes of Health

Authors: Williams P, Forbes T, P. Lund S, Cole K, He H, Karlovich C, Paweletz C, Stetson D, Yee L, Connors D, Keating S, Destenaves B, Cleveland M, Lau C, Barrett J, Kelloff G, McCormack R (2021 - JCO Precision Oncology)

Single-copy detection of somatic variants from solid and liquid biopsy

Authors:  Silva A, Powalowska P, Stolarek M, Gray E, Palmer R, Herman B, Frayling C, Balmforth B (2021 - Scientific Reports)

Evaluation of the Oncomine Pan-Cancer Cell-Free Assay for Analyzing Circulating Tumor DNA in the Cerebrospinal Fluid in Patients with Central Nervous System Malignancies

Authors: Shah M, Takayasu T, Zorofchian Moghadamtousi S, Arevalo O, Chen M, Lan C, Duose D, Hu P, Zhu J, Roy-Chowdhuri S, Riascos R, Chen H, Luthra R, Esquenazi Y, Ballester L (2021 - The Journal of Molecular Diagnostics)

Enhanced specificity of clinical high-sensitivity tumor mutation profiling in cell-free DNA via paired normal sequencing using MSK-ACCESS

Authors: Rose Brannon A, Jayakumaran G, Diosdado M, Patel J, Razumova A, Hu Y, Meng F, Haque M, Sadowska J, Murphy B, Baidi T, Johnson I, Ptashkin R, Hasan M, Srinivasan P, Rema A, Rijo I, Agarunov A, Won H, Perera D, Brown D, Samolia A, Jing X, Gedvilaite E, Yang J, Stephens D, Dix J, DeGroat N, Nafa K, Syed A, Li A, Lebow E, Bowman A, Ferguson D, Liu Y, Mata D, Sharma R, Yang S, Bale T, Benhamida J, Chang J, Dogan S, Hameed M, Hechtman J, Moung C, Ross D, Vakiani E, Vanderbilt C, Yao J, Razavi P, Smyth L, Chandarlapaty S, Iyer G, Abida W, Harding J, Krantz B, O'Reilly E, Yu H, Li B, Rudin C, Diaz L, Solit D, Arcilla M, Ladanyi M, Loomis B, Tsui D, Berger M, Zehir A, Benayed R (2021 - Nature Communications)

Genetic variants and tumor immune microenvironment: Clues for targeted therapies in inflammatory breast cancer (ibc)

Author: Gong Y, Nagarathinam R, Arisi M, Gerratana L, Winn J, Slifker M, Pei J, Cai K, Hasse Z, Obeid E, Noriega J, Sebastino C, Ross E, Alpaugh K, Cristofanilli M, Fernandez S (2021 - MDPI)

Targets, pitfalls and reference materials for liquid biopsy tests in cancer diagnostics

Authors: Geeurickx E, Hendrix A (2020 - ScienceDirect)

Detection of genomic alterations in breast cancer with circulating tumour DNA sequencing

Authors: Kleftogiannis D, Ho D, Liew J, Poon P, Gan A, Ng R, Tan B, Tay K, Lim S, Tan G, Shih C, Lim T, Lee A, Tan I, Yap Y, Ng S (2020 - PubMed)

Comprehensive characterization of cell-free tumor DNA in plasma and urine of patients with renal tumors

Authors: Smith C, Moser T, Mouliere F, Field-Rayner J, Eldridge M, Riediger A, Chandrananda D, Heider K, Wan J, Warren A, Morris J, Hudecova I, Cooper W, Mithcell T, Gale D, Ruiz-Valdepenas A, Klatte T, Ursprung S, Sala E, Riddick A, Aho T, Matakidou A, Eisen T, Massie C, Rosenfeld N, Heitzer E, Stewart G (2020 - Genome Medicine)

Analytical performance evaluation of TruSight Oncology 500 ( TSO500 ) ctDNA kit ; a commercial next generation sequencing liquid biopsy platform

Authors: Verma S, Naef T, Horvath K, Moore M, Cotter P, Gunn S, Pacificdx R (2020 - National Library of Medicine)

Technical evaluation of commercial mutation analysis platforms and reference materials for liquid biopsy profiling

Authors: Weber S, Spiegl B, Perakis S, Ulz C, Abuja P, Kashofer K, vander Leest P, Azpurua M, Tamminga M, Brudzewsky D, Rothwell D, Mohan S, Sartori A, Lampignano R, Konigshofer Y, Sprenger-Haussels M, Wikman H, Bergheim I, Kloten V, Schuuring E, Speicher M, Heitzer E (2020 - MDPI)

Clinical Validation of a Cell-Free DNA Gene Panel

Authors: Cheng J, Cao Y, MacLeay A, Lennerz J, Baig A, Frazier R, Lee J, Hu K, Pacula M, Meneses E, Robinson H, Batten J, Brastianos P, Heist R, Bardia A, Le L, lafrate A (2019 - The Journal of Molecular Diagnostics)

Structural variation and fusion detection using targeted sequencing data from circulating cell free DNA

Authors: Gawronski A, Lin Y, McConeghy B, Lebihan S, Asghari H, Kockan C, Orabi B, Adra N, Pili R, Collins C, Sahinalp S, Hach F (2019 - National Library of Medicine)

Targeted Single Primer Enrichment Sequencing with Single End Duplex-UMI

Authors: Peng Q, Xu C, Kim D, Lewis M, DiCarlo J, Wang Y (2019 - Scientific Reports)

Technical and Regulatory Considerations for Taking Liquid Biopsy to the Clinic: Validation of the JAX PlasmaMonitorTM Assay

Authors: Sisson B, Uvalic J, Kelly K, Selvam P, Hesse A, Ananda G, Chandok H, Bergerson D, Holinka L, Reddi H (2019 - Sage Journals)

Precision cancer monitoring using a novel, fully integrated, microfluidic array partitioning digital PCR platform

Authors: Dueck M, Lin R, Zayac A, Gallagher S, Chao A, Jiang L, Datwani S, Hung P, Stieglitz E (2019 - Scientific Reports)

Impact of Polymerase Fidelity on Background Error Rates in Next-Generation Sequencing with Unique Molecular Identifiers/Barcodes

Authors: Filges S, Yamada E, Stahlberg A, Godfrey T (2019 - Scientific Reports)

Multilaboratory Assessment of a New Reference Material for Quality Assurance of Cell-Free Tumor DNA Measurements

Authors: He H, Stein E, Konigshofer Y, Forbes T, Tomson F, Garlick R, Yamada E, Godfrey T, Abe T, Tamura K, Borges M, Goggins M, Elmore S, Gulley M, Larson J, Ringel L, Haynes B, Karlovich C, Williams P, Garnett A, Stahlberg A, Filges S, Sorbara L, Young M, Srivastava S, Cole K (2019 - The Journal of Molecular Diagnostics)

Circulating tumor DNA in patients with colorectal adenomas: assessment of detectability and genetic heterogeneity

Authors: Myint N, Verma A, Fernandez-Garcia D, Sarmah P, Tarpey P, Al-Aqbi S, Cai H, Trigg R, West K, Howells L, Thomas A, Brown K, Guttery D, Singh B, Pringle H, McDermott U, Shaw J, Rufini A (2018 - PubMed)

 

Personalized Cancer Monitoring Assay for the Detection of ctDNA in Patients with Solid Tumors

Authors: Zhao J, Reuther J, Scozzaro K, Hawley M, Metzger E, Emery M, Chen I, Barbosa M, Johnson L, O'Connor A, Washburn M, Hartje L, Reckase E, Johnson V, Zhang Y, Westheimer E, O'Callaghan W, Malani N, Chesh A, Moreau M, Daber R (2023 - Springer Link)

Persistence of ctDNA in Patients with Breast Cancer During Neoadjuvant Treatment Is a Significant Predictor of Poor Tumor Response

Authors: Zhou Q, Gampenrieder S, Frantal S, Rinnerthaler G, Singer C, Egle D, Pfeiler G, Bartsch R, Wette V, Pichler A, Petru E, Dubsky P, Bago-Horvath Z, Fesl C, Rudas M, Stahlberg A, Graf R, Weber S, Dandachi N, Filipits M, Gnant M, Balic M, Heitzer E (2022 - American Association for Cancer Research) 

Ultrasensitive detection of tumor-specific mutations in saliva of patients with oral cavity squamous cell carcinoma

Authors: Shanmugam A, Hariharan A, Hasina R, Nair J, Katragadda S, Irusappan S, Ravichandran A, Veeramachaneni V, Bettadapura R, Bhati M, Ramaswamy V, Rao V, Bagadia R, Manjunath A, Manjunath N, Solomon M, Maji S, Bahadur U, Bettegowda C, Papadopoulos N, Lingen M, Hariharan R, Gupta V, Agrawal N, Izumchenko E (2021 - American Cancer Society Journals)

Targeted Next-Generation Sequencing of Plasma Cell-Free DNA in Korean Patients with Hepatocellular Carcinoma

Authors: Chae H, Sung P, Choi H, Kwon A, Kang D, Kim Y, Kim M, Yoon S (2021 - KAMJE Synapse)

Decline in circulating viral and human tumor markers after resection of head and neck carcinoma

Authors: Lopez E, Tanner A, Du E, Patel S, Weiss J, Weissler M, Hackman T, Gupta G, Zevallos J, Elmore S, Betancourt R, Thorne L, Sheth S, Gulley M (2021 - PubMed)

On-treatment measurements of circulating tumor DNA during FOLFOX therapy in patients with colorectal cancer

Authors: Moser T, Waldispuehl-Geigl J, Belic J, Weber S, Zhou Q, Hasenleithner S, Graf R, Terzic J, Posch F, Sill H, Lax S, Kashofer K, Hoefler G, Schoellnast H, Heitzer E, Geigl J, Bauernhofer T, Speicher M (2020 - NPJ Precision Oncology)

Personalized circulating tumor DNA analysis as a predictive biomarker in solid tumor patients treated with pembrolizumab

Authors: Bratman S, Yang S, lafolla M, Liu Z, Hansen A, Bedard P, Lheureux S, Spreafico A, Razak A, Shchegrova S, Louie M, Billings P, Zimmermann B, Sethi H, Aleshin A, Torti D, Marsh K, Eagles J, Cirlan I, Hanna Y, Clouthier D, Lien S, Ohashi P, Xu W, Siu L, Pugh T (2020 - Nature Cancer)

Personalized circulating tumor DNA analysis to detect residual disease after neoadjuvant therapy in breast cancer

Authors: McDonald B, Contente-Cuomo T, Sammut S, Odenheimer-Bregman A, Ernst B, Perdigones N, Chin S, Farooq M, Mejia R, Cronin P, Anderson K, Kosiorek H, Northfelt D, McCullough A, Patel B, Weitzel J, Slavin T, Caldas C, Pockaj B, Murtaza M (2019 - Science Translational Medicine)

 

Personalized Cancer Monitoring Assay for the Detection of ctDNA in Patients with Solid Tumors

Authors: Zhao J, Reuther J, Scozzaro K, Hawley M, Metzger E, Emery M, Chen I, Barbosa M, Johnson L, O'Connor A, Washburn M, Hartle L, Reckase E, Johnson V, Zhang Y, Westheimer E, O'Callaghan W, Malani N, Chesh A, Moreau M, Daber R (2023 - Springer Link)

Analytical Validation and Clinical Utilization of the Oncomine Comprehensive Assay Plus Panel for Comprehensive Genomic Profiling in Solid Tumors

Authors: Dumur C, Krishnan R, Almenara J, Brown K, Dugan K, Farni C, Ibrahim F, Sanchez N, Rathore S, Pradhan D, Hughes J (2023 - MDPI)

Technical Validation and Clinical Utility of an NGS Targeted Panel to Improve Molecular Characterization of Pediatric Acute Leukemia

Authors: Vicente-Garces C, Esperanza-Cebollada E, Montesdeoca S, Torrebadell M, Rives S, Dapena J, Catala A, Conde N, Camos M, Vega-Garcia N (2022 - Frontiers)

Homologous recombination deficiency (HRD) as an ovarian cancer biomarker in a real-world cohort – validation of decentralized genomic profiling

Authors: Denkert C, Romey M, Swedlund B, Hattesohl A, Teply-Szymanski J, Kommoss S, Kaiser K, Staebler A, du Bois A, Grass A, Knappmeyer C, Heitz F, Solimeno C, Ebel T, Harter P, Marme F, Jank P, Gaiser T, Neff C, Wagner U, Timms K, Rodepeter F (2022 - The Journal of Molecular Diagnostics)

Quality metrics for enhanced performance of an NGS panel using single-vial amplification technology

Authors: Barua S, Hsiao S, Clancy E, Freeman C, Mansukhani M, Fernandes H (2022 - BMJ Journals)

An Integrative DNA Sequencing and Methylation Panel to Assess Mismatch Repair Deficiency

Authors: Oldfield L, Li T, Tone A, Aronson M, Edwards M, Holter S, Quevedo R, Van de Laar E, Lerner-Ellis J, Pollett A, Clarke B, Tabori U, Gallinger S, Ferguson S, Pugh T (2021 - The Journal of Molecular Diagnostics)

A robust targeted sequencing approach for low input and variable quality DNA from clinical samples

Authors: So A, Vilborg A, Bouhlal Y, Koehler R, Grimes S, Pouliot Y, Mendoza D, Ziegle J, Stein J, Goodsaid F, Lucero M, De La Vega F, Ji H (2018 - NPJ Genomic Medicine)

Analytical validation of a next generation sequencing liquid biopsy assay for high sensitivity broad molecular profiling

Authors: Plagnol V, Woodhouse S, Howarth K, Lensing S, Smith M, Epstein M, Madi M, Smalley S, Leroy C, Hinton J, De Kievit F, Musgrave-Brown E, Herd C, Baker-Neblett K, Brennan W, Dimitrov P, Campbell N, Morris C, Rosenfeld N, Clark J, Gale D, Platt J, Calaway J, Jones G, Forshew T (2018 - Plos One)

Use of Biosynthetic Controls as Performance Standards for Next-Generation Sequencing Assays of Somatic Tumors: A Multilaboratory Study

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Validation of the Idylla GeneFusion assay to detect fusions and MET exon-skipping in non-small cell lung cancers

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